Phytoplankton pangenome reveals extensive prokaryotic horizontal gene transfer of diverse functions.
Identifieur interne : 000096 ( Main/Exploration ); précédent : 000095; suivant : 000097Phytoplankton pangenome reveals extensive prokaryotic horizontal gene transfer of diverse functions.
Auteurs : Xiao Fan [République populaire de Chine] ; Huan Qiu [États-Unis] ; Wentao Han [République populaire de Chine] ; Yitao Wang [République populaire de Chine] ; Dong Xu [République populaire de Chine] ; Xiaowen Zhang [République populaire de Chine] ; Debashish Bhattacharya [États-Unis] ; Naihao Ye [République populaire de Chine]Source :
- Science advances [ 2375-2548 ] ; 2020.
Abstract
The extent and role of horizontal gene transfer (HGT) in phytoplankton and, more broadly, eukaryotic evolution remain controversial topics. Recent studies substantiate the importance of HGT in modifying or expanding functions such as metal or reactive species detoxification and buttressing halotolerance. Yet, the potential of HGT to significantly alter the fate of species in a major eukaryotic assemblage remains to be established. We provide such an example for the ecologically important lineages encompassed by cryptophytes, rhizarians, alveolates, stramenopiles, and haptophytes ("CRASH" taxa). We describe robust evidence of prokaryotic HGTs in these taxa affecting functions such as polysaccharide biosynthesis. Numbers of HGTs range from 0.16 to 1.44% of CRASH species gene inventories, comparable to the ca. 1% prokaryote-derived HGTs found in the genomes of extremophilic red algae. Our results substantially expand the impact of HGT in eukaryotes and define a set of general principles for prokaryotic gene fixation in phytoplankton genomes.
DOI: 10.1126/sciadv.aba0111
PubMed: 32494685
PubMed Central: PMC7190310
Affiliations:
- République populaire de Chine, États-Unis
- Maryland, New Jersey
- New Brunswick (New Jersey)
- Université Rutgers
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sort="Han, Wentao" uniqKey="Han W" first="Wentao" last="Han">Wentao Han</name><affiliation wicri:level="1"><nlm:affiliation>Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao</wicri:regionArea><wicri:noRegion>Qingdao</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Yitao" sort="Wang, Yitao" uniqKey="Wang Y" first="Yitao" last="Wang">Yitao Wang</name><affiliation wicri:level="1"><nlm:affiliation>Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, 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Chinese Academy of Fishery Sciences, Qingdao</wicri:regionArea><wicri:noRegion>Qingdao</wicri:noRegion></affiliation></author><author><name sortKey="Bhattacharya, Debashish" sort="Bhattacharya, Debashish" uniqKey="Bhattacharya D" first="Debashish" last="Bhattacharya">Debashish Bhattacharya</name><affiliation wicri:level="4"><nlm:affiliation>Department of Biochemistry and Microbiology, Rutgers University, 59 Dudley Road, Foran Hall 102, New Brunswick, NJ 08901, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biochemistry and Microbiology, Rutgers University, 59 Dudley Road, Foran Hall 102, New Brunswick, NJ 08901</wicri:regionArea><placeName><region type="state">New Jersey</region><settlement type="city">New Brunswick (New Jersey)</settlement></placeName><orgName type="university">Université Rutgers</orgName></affiliation></author><author><name sortKey="Ye, Naihao" sort="Ye, Naihao" uniqKey="Ye N" first="Naihao" last="Ye">Naihao Ye</name><affiliation wicri:level="1"><nlm:affiliation>Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao</wicri:regionArea><wicri:noRegion>Qingdao</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Function Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Function Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao</wicri:regionArea><wicri:noRegion>Qingdao</wicri:noRegion></affiliation></author></analytic><series><title level="j">Science advances</title><idno type="eISSN">2375-2548</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The extent and role of horizontal gene transfer (HGT) in phytoplankton and, more broadly, eukaryotic evolution remain controversial topics. Recent studies substantiate the importance of HGT in modifying or expanding functions such as metal or reactive species detoxification and buttressing halotolerance. Yet, the potential of HGT to significantly alter the fate of species in a major eukaryotic assemblage remains to be established. We provide such an example for the ecologically important lineages encompassed by cryptophytes, rhizarians, alveolates, stramenopiles, and haptophytes ("CRASH" taxa). We describe robust evidence of prokaryotic HGTs in these taxa affecting functions such as polysaccharide biosynthesis. Numbers of HGTs range from 0.16 to 1.44% of CRASH species gene inventories, comparable to the ca. 1% prokaryote-derived HGTs found in the genomes of extremophilic red algae. Our results substantially expand the impact of HGT in eukaryotes and define a set of general principles for prokaryotic gene fixation in phytoplankton genomes.</div></front></TEI><pubmed><MedlineCitation Status="In-Data-Review" Owner="NLM"><PMID Version="1">32494685</PMID><DateRevised><Year>2020</Year><Month>06</Month><Day>06</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">2375-2548</ISSN><JournalIssue CitedMedium="Internet"><Volume>6</Volume><Issue>18</Issue><PubDate><Year>2020</Year><Month>May</Month></PubDate></JournalIssue><Title>Science advances</Title><ISOAbbreviation>Sci Adv</ISOAbbreviation></Journal><ArticleTitle>Phytoplankton pangenome reveals extensive prokaryotic horizontal gene transfer of diverse functions.</ArticleTitle><Pagination><MedlinePgn>eaba0111</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1126/sciadv.aba0111</ELocationID><Abstract><AbstractText>The extent and role of horizontal gene transfer (HGT) in phytoplankton and, more broadly, eukaryotic evolution remain controversial topics. Recent studies substantiate the importance of HGT in modifying or expanding functions such as metal or reactive species detoxification and buttressing halotolerance. Yet, the potential of HGT to significantly alter the fate of species in a major eukaryotic assemblage remains to be established. We provide such an example for the ecologically important lineages encompassed by cryptophytes, rhizarians, alveolates, stramenopiles, and haptophytes ("CRASH" taxa). We describe robust evidence of prokaryotic HGTs in these taxa affecting functions such as polysaccharide biosynthesis. Numbers of HGTs range from 0.16 to 1.44% of CRASH species gene inventories, comparable to the ca. 1% prokaryote-derived HGTs found in the genomes of extremophilic red algae. Our results substantially expand the impact of HGT in eukaryotes and define a set of general principles for prokaryotic gene fixation in phytoplankton genomes.</AbstractText><CopyrightInformation>Copyright © 2020 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC).</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Fan</LastName><ForeName>Xiao</ForeName><Initials>X</Initials><Identifier Source="ORCID">0000-0002-7093-8868</Identifier><AffiliationInfo><Affiliation>Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Function Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Key Laboratory of Exploration and Utilization of Aquatic Genetic Resources, Ministry of Education, Shanghai Ocean University, Shanghai 201306, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>National Demonstration Center for Experimental Fisheries Science Education, Shanghai Ocean University, Shanghai 201306, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>International Research Center for Marine Biosciences, Ministry of Science and Technology, Shanghai Ocean University, Shanghai 201306, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Qiu</LastName><ForeName>Huan</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Independent scholar, 121 Goucher Terrace, Gaithersburg, MD 20877, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Han</LastName><ForeName>Wentao</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Yitao</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Xu</LastName><ForeName>Dong</ForeName><Initials>D</Initials><Identifier Source="ORCID">0000-0001-8826-3304</Identifier><AffiliationInfo><Affiliation>Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Xiaowen</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bhattacharya</LastName><ForeName>Debashish</ForeName><Initials>D</Initials><Identifier Source="ORCID">0000-0003-0611-1273</Identifier><AffiliationInfo><Affiliation>Department of Biochemistry and Microbiology, Rutgers University, 59 Dudley Road, Foran Hall 102, New Brunswick, NJ 08901, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ye</LastName><ForeName>Naihao</ForeName><Initials>N</Initials><Identifier Source="ORCID">0000-0002-8294-1044</Identifier><AffiliationInfo><Affiliation>Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Function Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>04</Month><Day>29</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Sci 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IdType="pmc">PMC7190310</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Nat Protoc. 2016 Sep;11(9):1650-67</Citation><ArticleIdList><ArticleId IdType="pubmed">27560171</ArticleId></ArticleIdList></Reference><Reference><Citation>J Phycol. 2012 Oct 1;48(5):1130-1142</Citation><ArticleIdList><ArticleId IdType="pubmed">23066170</ArticleId></ArticleIdList></Reference><Reference><Citation>Trends Genet. 1998 Aug;14(8):307-11</Citation><ArticleIdList><ArticleId IdType="pubmed">9724962</ArticleId></ArticleIdList></Reference><Reference><Citation>Elife. 2019 May 31;8:</Citation><ArticleIdList><ArticleId IdType="pubmed">31149898</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2008 May 30;320(5880):1210-3</Citation><ArticleIdList><ArticleId IdType="pubmed">18511688</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2006 Nov;23(11):2072-80</Citation><ArticleIdList><ArticleId IdType="pubmed">16887903</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2015 Jan;32(1):268-74</Citation><ArticleIdList><ArticleId IdType="pubmed">25371430</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2016 Apr 12;113(15):4116-21</Citation><ArticleIdList><ArticleId IdType="pubmed">27035945</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioessays. 2014 Jan;36(1):9-20</Citation><ArticleIdList><ArticleId IdType="pubmed">24323918</ArticleId></ArticleIdList></Reference><Reference><Citation>Mar Drugs. 2018 Dec 20;17(1):</Citation><ArticleIdList><ArticleId IdType="pubmed">30577419</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2016 Oct 25;113(43):12214-12219</Citation><ArticleIdList><ArticleId IdType="pubmed">27791007</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2014 Aug 1;30(15):2114-20</Citation><ArticleIdList><ArticleId IdType="pubmed">24695404</ArticleId></ArticleIdList></Reference><Reference><Citation>Enzyme Microb Technol. 2015 Apr;71:66-72</Citation><ArticleIdList><ArticleId IdType="pubmed">25765312</ArticleId></ArticleIdList></Reference><Reference><Citation>Trends Genet. 2000 Jun;16(6):276-7</Citation><ArticleIdList><ArticleId IdType="pubmed">10827456</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2006 Feb;23(2):254-67</Citation><ArticleIdList><ArticleId IdType="pubmed">16221896</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Biol. 2016 Sep 12;14(1):77</Citation><ArticleIdList><ArticleId IdType="pubmed">27619515</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Biol. 2016 May 23;14:41</Citation><ArticleIdList><ArticleId IdType="pubmed">27215567</ArticleId></ArticleIdList></Reference><Reference><Citation>Cell. 2013 Jun 20;153(7):1567-78</Citation><ArticleIdList><ArticleId IdType="pubmed">23791183</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2018 Jul 6;361(6397):72-76</Citation><ArticleIdList><ArticleId IdType="pubmed">29976823</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2010 Oct 1;26(19):2460-1</Citation><ArticleIdList><ArticleId IdType="pubmed">20709691</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS Comput Biol. 2009 May;5(5):e1000386</Citation><ArticleIdList><ArticleId IdType="pubmed">19461883</ArticleId></ArticleIdList></Reference><Reference><Citation>DNA Res. 2019 Aug 1;26(4):287-299</Citation><ArticleIdList><ArticleId IdType="pubmed">31098614</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2009 Jun 26;324(5935):1724-6</Citation><ArticleIdList><ArticleId IdType="pubmed">19556510</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2012 Sep;29(9):2223-30</Citation><ArticleIdList><ArticleId IdType="pubmed">22411854</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Biotechnol. 2015 Mar;33(3):290-5</Citation><ArticleIdList><ArticleId IdType="pubmed">25690850</ArticleId></ArticleIdList></Reference><Reference><Citation>J Phycol. 2015 Aug;51(4):624-36</Citation><ArticleIdList><ArticleId IdType="pubmed">26986787</ArticleId></ArticleIdList></Reference><Reference><Citation>Genomics Proteomics Bioinformatics. 2006 Nov;4(4):259-63</Citation><ArticleIdList><ArticleId IdType="pubmed">17531802</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS Biol. 2014 Jun 24;12(6):e1001889</Citation><ArticleIdList><ArticleId IdType="pubmed">24959919</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Commun. 2015 Apr 24;6:6986</Citation><ArticleIdList><ArticleId IdType="pubmed">25908475</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2014 Jan;42(Database issue):D251-8</Citation><ArticleIdList><ArticleId IdType="pubmed">24225317</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Biol. 2015 Oct 5;25(19):R911-21</Citation><ArticleIdList><ArticleId IdType="pubmed">26439354</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS Curr. 2016 Mar 15;8:</Citation><ArticleIdList><ArticleId IdType="pubmed">28515968</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol. 2016 Feb 25;17:32</Citation><ArticleIdList><ArticleId IdType="pubmed">26911872</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2005 Sep 15;21(18):3674-6</Citation><ArticleIdList><ArticleId IdType="pubmed">16081474</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Bioinformatics. 2008 Jan 29;9:65</Citation><ArticleIdList><ArticleId IdType="pubmed">18230160</ArticleId></ArticleIdList></Reference><Reference><Citation>Trends Genet. 2010 Jan;26(1):5-8</Citation><ArticleIdList><ArticleId IdType="pubmed">19969385</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2016 Mar 15;113(11):E1516-25</Citation><ArticleIdList><ArticleId IdType="pubmed">26929361</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2015 Aug 18;112(33):10139-46</Citation><ArticleIdList><ArticleId IdType="pubmed">25733873</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Rev Microbiol. 2018 Feb;16(2):67-79</Citation><ArticleIdList><ArticleId IdType="pubmed">29176581</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS Comput Biol. 2015 May 28;11(5):e1004095</Citation><ArticleIdList><ArticleId IdType="pubmed">26020646</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2009 Aug 1;25(15):1972-3</Citation><ArticleIdList><ArticleId IdType="pubmed">19505945</ArticleId></ArticleIdList></Reference><Reference><Citation>mBio. 2016 Jul 12;7(4):</Citation><ArticleIdList><ArticleId IdType="pubmed">27406565</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioessays. 2013 Oct;35(10):868-75</Citation><ArticleIdList><ArticleId IdType="pubmed">24037739</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2017 Jan 26;541(7638):536-540</Citation><ArticleIdList><ArticleId IdType="pubmed">28092920</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2013 May 7;110(19):7748-53</Citation><ArticleIdList><ArticleId IdType="pubmed">23610429</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2010 Mar 10;5(3):e9490</Citation><ArticleIdList><ArticleId IdType="pubmed">20224823</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Methods. 2015 Apr;12(4):357-60</Citation><ArticleIdList><ArticleId IdType="pubmed">25751142</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Rev Genet. 2015 Jul;16(7):409-20</Citation><ArticleIdList><ArticleId IdType="pubmed">26055156</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2002 Dec;19(12):2226-38</Citation><ArticleIdList><ArticleId IdType="pubmed">12446813</ArticleId></ArticleIdList></Reference><Reference><Citation>Commun Biol. 2018 Jul 17;1:95</Citation><ArticleIdList><ArticleId IdType="pubmed">30271976</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Biol. 2013 Oct 7;23(19):R865-6</Citation><ArticleIdList><ArticleId IdType="pubmed">24112977</ArticleId></ArticleIdList></Reference><Reference><Citation>Sci Rep. 2019 Feb 22;9(1):2571</Citation><ArticleIdList><ArticleId IdType="pubmed">30796282</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2009 Aug 15;25(16):2078-9</Citation><ArticleIdList><ArticleId IdType="pubmed">19505943</ArticleId></ArticleIdList></Reference><Reference><Citation>Sci Rep. 2019 Feb 22;9(1):2560</Citation><ArticleIdList><ArticleId IdType="pubmed">30796245</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Methods. 2017 Jun;14(6):587-589</Citation><ArticleIdList><ArticleId IdType="pubmed">28481363</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Biol. 2016 Oct 17;14(1):89</Citation><ArticleIdList><ArticleId IdType="pubmed">27751184</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol. 2015 Aug 06;16:157</Citation><ArticleIdList><ArticleId IdType="pubmed">26243257</ArticleId></ArticleIdList></Reference><Reference><Citation>J Eukaryot Microbiol. 1999 Jul-Aug;46(4):347-66</Citation><ArticleIdList><ArticleId IdType="pubmed">18092388</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2015 Aug 27;524(7566):427-32</Citation><ArticleIdList><ArticleId IdType="pubmed">26287458</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2004 Mar 19;32(5):1792-7</Citation><ArticleIdList><ArticleId IdType="pubmed">15034147</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2013 May;30(5):1188-95</Citation><ArticleIdList><ArticleId IdType="pubmed">23418397</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2018 Jul 2;46(W1):W95-W101</Citation><ArticleIdList><ArticleId IdType="pubmed">29771380</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li><li>États-Unis</li></country><region><li>Maryland</li><li>New Jersey</li></region><settlement><li>New Brunswick (New Jersey)</li></settlement><orgName><li>Université Rutgers</li></orgName></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Fan, Xiao" sort="Fan, Xiao" uniqKey="Fan X" first="Xiao" last="Fan">Xiao Fan</name></noRegion><name sortKey="Fan, Xiao" sort="Fan, Xiao" uniqKey="Fan X" first="Xiao" last="Fan">Xiao Fan</name><name sortKey="Fan, Xiao" sort="Fan, Xiao" uniqKey="Fan X" first="Xiao" last="Fan">Xiao Fan</name><name sortKey="Fan, Xiao" sort="Fan, Xiao" uniqKey="Fan X" first="Xiao" last="Fan">Xiao Fan</name><name sortKey="Fan, Xiao" sort="Fan, Xiao" uniqKey="Fan X" first="Xiao" last="Fan">Xiao Fan</name><name sortKey="Han, Wentao" sort="Han, Wentao" uniqKey="Han W" first="Wentao" last="Han">Wentao Han</name><name sortKey="Wang, Yitao" sort="Wang, Yitao" uniqKey="Wang Y" first="Yitao" last="Wang">Yitao Wang</name><name sortKey="Xu, Dong" sort="Xu, Dong" uniqKey="Xu D" first="Dong" last="Xu">Dong Xu</name><name sortKey="Ye, Naihao" sort="Ye, Naihao" uniqKey="Ye N" first="Naihao" last="Ye">Naihao Ye</name><name sortKey="Ye, Naihao" sort="Ye, Naihao" uniqKey="Ye N" first="Naihao" last="Ye">Naihao Ye</name><name sortKey="Zhang, Xiaowen" sort="Zhang, Xiaowen" uniqKey="Zhang X" first="Xiaowen" last="Zhang">Xiaowen Zhang</name></country><country name="États-Unis"><region name="Maryland"><name sortKey="Qiu, Huan" sort="Qiu, Huan" 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